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Species belonging to selected taxon:

Helianthus tuberosus



ABOUT THIS RECORD

ID: MNEST000900
species: Helianthus tuberosus
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCTCCTCATCATCATCTTCT

miRNA*
CATTGATGATGGGAGAAGAGA

mismatches: 4
bulges: 2

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pre-miRNA
ATTGTCTTCACTTGAACCCTTCATCATCACATTCATTAACTTTCCTTTATATTTACCTTTAAATTTCTTCCTCCTCCTCATCATCATCTTCTTCATCTCA
ACAAAATGAGAAAAGCTTAGAGCTTTTTTCAGTAGGAGCAGCAGCAGTAACAACCAATTAATTCAACACCAACCACTTTCACCTACGAATCCTTAACTTC
AAACTCACAAATCTTGGGTTGATTTTCAAGTAACAAAAAAACACAAAAATGGATTCATATGAAGCAACAAGAATTGTGTTCACAAAGCTCCAAACTTTAG
ACCCTCAAAACGCATCCAAAATCATGGGTCTTCTTCTCATTCAAGATCACGGTGAAAATGAAATGATTCGGATGGCCACTGCTGCAACAGCATTGATGAT
GGGAGAAGAGA
TGAACAACTTCGGTCGGTTAAGAAACGATTTCTTGATGGGTATGGTAAACCCGGGTTCGAGGCAAATT


dot-bracket secondary structure
..........(((((((((......((((.(((((((((...((.(((...((.(((.((.((.((.((((((.((((((((((((....((....(((.
......(((((((((((...)))))))))))....)))..((((((((..((.(((((((.((((...........(((((((...((((((...((((.
(((.(((............))).))).))))...................))))))...((((...((((...)))).)))).((((.......))))((
((((.....................))))))((((.......))))....))))))).)))).))))).)).))...))))))))...))...)))))))
))).)).))).
.))).)).)).))..))).)).))).))....))))))))).))))......))))))))).......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q9SV09|C3H46_ARATH: 0.0000000000005

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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